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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ71505.1TIGRFAM: lycopene cyclase domain. (254 aa)    
Predicted Functional Partners:
AFZ71506.1
Beta-carotene 15,15''-monooxygenase, Brp/Blh family; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
 
   
 0.946
AFZ74147.1
TIGRFAM: lycopene cyclase domain.
  
  
 
0.902
AFZ73378.1
Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
 
   
 0.740
AFZ74148.1
PFAM: Bacteriorhodopsin-like protein.
  
   
 0.729
AFZ72995.1
PFAM: Bacteriorhodopsin-like protein.
  
     0.687
AFZ71507.1
Putative membrane protein; PFAM: Tripartite tricarboxylate transporter TctA family.
       0.621
AFZ71504.1
Hypothetical protein.
       0.496
AFZ74690.1
Putative GTPase, probable translation factor; PFAM: GTPase of unknown function; TGS domain; GTPase of unknown function C-terminal.
  
     0.488
AFZ71364.1
Ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase; PFAM: Rieske [2Fe-2S] domain.
  
     0.459
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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