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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ71542.1PFAM: HTH DNA binding domain. (222 aa)    
Predicted Functional Partners:
AFZ74811.1
PFAM: HTH DNA binding domain.
  
     0.634
AFZ74101.1
Hypothetical protein.
  
     0.620
AFZ72837.1
Hypothetical protein.
  
     0.599
AFZ73332.1
Hypothetical protein.
  
     0.564
AFZ72694.1
ABC-type uncharacterized transport system, permease component; PFAM: High-affinity nickel-transport protein.
  
     0.547
AFZ71668.1
PFAM: HTH DNA binding domain.
  
     0.526
AFZ74376.1
Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain.
  
     0.519
AFZ74770.1
ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase.
  
     0.519
AFZ71953.1
Hypothetical protein.
  
     0.517
AFZ71648.1
PFAM: Cytochrome oxidase assembly protein.
  
     0.494
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.