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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ71595.1Hypothetical protein; PFAM: Uncharacterized ACR, COG1430; manually curated. (117 aa)    
Predicted Functional Partners:
AFZ71596.1
PFAM: Methyl-accepting chemotaxis protein (MCP) signaling domain.
       0.620
AFZ74512.1
RecA-superfamily ATPase possibly involved in signal transduction; PFAM: KaiC.
  
     0.614
AFZ72093.1
Hypothetical protein.
  
     0.608
AFZ72549.1
Hypothetical protein.
  
     0.595
AFZ71597.1
Hypothetical protein.
       0.591
AFZ73070.1
Cdc6-related protein, AAA superfamily ATPase; PFAM: ATPase family associated with various cellular activities (AAA).
  
     0.572
AFZ73843.1
Putative ATPase.
  
     0.538
AFZ74465.1
PFAM: Cytochrome C biogenesis protein transmembrane region.
  
     0.536
AFZ73931.1
PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E.
  
     0.516
AFZ71594.1
Isopropylmalate/homocitrate/citramalate synthase; PFAM: HMGL-like; LeuA allosteric (dimerisation) domain; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.493
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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