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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ71721.1Putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family. (142 aa)    
Predicted Functional Partners:
AFZ72216.1
Putative transcriptional regulator with CopG/Arc/MetJ DNA-binding domain and metal-binding domain; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
  
     0.753
AFZ71485.1
Growth inhibitor; PFAM: PemK-like protein.
  
 
 0.743
hemG
Protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; FAD dependent oxidoreductase; TIGRFAM: protoporphyrinogen oxidase.
 
     0.665
AFZ71722.1
Cupin domain-containing protein; PFAM: Cupin domain.
       0.604
AFZ74334.1
Molybdenum-binding protein; PFAM: TOBE domain; Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: molybdenum-pterin binding domain; ModE molybdate transport repressor domain.
  
   
 0.423
hypB
Hydrogenase accessory protein HypB; PFAM: CobW/HypB/UreG, nucleotide-binding domain; TIGRFAM: hydrogenase accessory protein HypB.
 
   
 0.401
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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