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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ71804.1Formate-dependent nitrite reductase, membrane component. (359 aa)    
Predicted Functional Partners:
AFZ71803.1
Fe-S-cluster-containing hydrogenase subunit; PFAM: 4Fe-4S binding domain.
  
  
 0.817
AFZ71802.1
Anaerobic dehydrogenase, typically selenocysteine-containing; PFAM: TAT (twin-arginine translocation) pathway signal sequence; Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; Molybdopterin oxidoreductase Fe4S4 domain.
  
  
 0.806
AFZ71805.1
Putative component of anaerobic dehydrogenase; PFAM: Nitrate reductase delta subunit.
       0.785
AFZ71806.1
PFAM: HTH DNA binding domain.
       0.773
AFZ74259.1
PFAM: Cytochrome C assembly protein; TIGRFAM: c-type cytochrome biogenesis protein CcmF.
  
  
 0.432
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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