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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ71868.1PFAM: PAP2 superfamily. (266 aa)    
Predicted Functional Partners:
AFZ71869.1
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
   
 0.830
AFZ71867.1
PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
   
 0.674
AFZ73558.1
Putative lipoprotein involved in nitrous oxide reduction; PFAM: NosL.
  
     0.594
atpC
ATP synthase A1, C subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 
 0.592
AFZ72331.1
PFAM: E3 Ubiquitin ligase.
  
     0.571
AFZ74515.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
 
   
 0.567
AFZ71985.1
Hypothetical protein.
  
     0.553
atpF
Archaeal/vacuolar-type H+-ATPase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.546
AFZ72581.1
Putative pyrophosphatase; PFAM: MazG nucleotide pyrophosphohydrolase domain.
 
     0.534
rpl6p
Archaeal ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.532
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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