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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ71980.1PFAM: Acetyltransferase (GNAT) family. (321 aa)    
Predicted Functional Partners:
gatD
glutamyl-tRNA(Gln) amidotransferase, subunit D; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). The GatDE system is specific for glutamate and does not act on aspartate.
       0.825
AFZ72704.1
DNA helicase, Rad3; PFAM: DEAD_2.
  
 
   0.687
AFZ73096.1
Putative DHD superfamily phosphohydrolase.
  
     0.681
AFZ71982.1
Hypothetical protein.
       0.637
AFZ72146.1
Hypothetical protein.
  
     0.584
AFZ72160.1
Plastocyanin; PFAM: Copper binding proteins, plastocyanin/azurin family.
  
     0.579
AFZ74731.1
Hypothetical protein.
  
     0.573
fau-1
Protein of unknown function (DUF402); Probable RNase involved in rRNA stability through maturation and/or degradation of precursor rRNAs. Binds to RNA in loop regions with AU-rich sequences.
 
     0.567
AFZ72413.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase.
  
     0.567
AFZ71488.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.563
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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