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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ72125.1Thioredoxin-like protein; PFAM: NifU-like domain. (127 aa)    
Predicted Functional Partners:
AFZ74897.1
PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein.
  
 
 0.721
AFZ72726.1
PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family.
  
 
 0.698
AFZ71746.1
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein.
  
 
 0.693
ilvD
PFAM: Dehydratase family; TIGRFAM: dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
  
 
 0.648
AFZ72103.1
NADH:ubiquinone oxidoreductase chain I-like protein; TIGRFAM: NADH-quinone oxidoreductase, chain I.
  
  
 0.632
AFZ71713.1
PFAM: LVIVD repeat.
      0.614
AFZ72127.1
Homoserine dehydrogenase; PFAM: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; Homoserine dehydrogenase.
     
 0.540
AFZ71534.1
Glutaredoxin-related protein; PFAM: Glutaredoxin; TIGRFAM: monothiol glutaredoxin, Grx4 family.
   
 
 0.512
AFZ72126.1
ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase.
       0.512
AFZ72124.1
Hypothetical protein.
       0.472
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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