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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ72137.1Phytoene dehydrogenase-like oxidoreductase; PFAM: Flavin containing amine oxidoreductase. (425 aa)    
Predicted Functional Partners:
AFZ73385.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
  
 0.865
AFZ71380.1
PFAM: Magnesium chelatase, subunit ChlI; von Willebrand factor type A domain.
 
  
 0.768
AFZ71320.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
  
 0.732
AFZ72136.1
Hypothetical protein.
       0.558
cobN
PFAM: CobN/Magnesium Chelatase; TIGRFAM: cobaltochelatase, CobN subunit.
 
  
 0.551
AFZ72028.1
Flavin-dependent dehydrogenase; PFAM: Lycopene cyclase protein; TIGRFAM: geranylgeranyl reductase family.
 
  
 0.492
AFZ71874.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.
 
  
 0.489
AFZ73380.1
PFAM: Protein of unknown function (DUF422); TIGRFAM: carotene biosynthesis associated membrane protein.
 
   
 0.468
hemG
Protoporphyrinogen oxidase; PFAM: Flavin containing amine oxidoreductase; FAD dependent oxidoreductase; TIGRFAM: protoporphyrinogen oxidase.
  
  
 0.462
AFZ74892.1
Flavin-dependent dehydrogenase; PFAM: Pyridine nucleotide-disulphide oxidoreductase.
 
  
 0.457
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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