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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ72308.1TIGRFAM: TIGR01210 family protein. (365 aa)    
Predicted Functional Partners:
AFZ72282.1
PFAM: PUA domain; Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; uncharacterized domain 2.
 
     0.756
AFZ73963.1
PFAM: Uncharacterised protein family (UPF0179); Belongs to the UPF0179 family.
  
     0.737
AFZ71908.1
Putative coiled-coil protein.
  
     0.728
AFZ73624.1
Putative transcriptional regulator; PFAM: Helix-turn-helix.
  
     0.712
rpl40e
PFAM: Ribosomal L40e family; Belongs to the eukaryotic ribosomal protein eL40 family.
  
     0.695
AFZ71854.1
Single-stranded DNA-binding protein.
  
     0.678
AFZ74819.1
Putative metal-dependent hydrolase (urease superfamily); PFAM: TatD related DNase.
  
     0.674
AFZ71853.1
Hypothetical protein.
  
     0.666
AFZ72092.1
Hypothetical protein; Manually curated.
  
     0.656
AFZ72031.1
PFAM: PAC2 family; TIGRFAM: TIGR00162 family protein.
  
     0.646
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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