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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ72798.1PFAM: Peptidase S24-like. (297 aa)    
Predicted Functional Partners:
AFZ72779.1
PFAM: Peptidase S24-like.
  
  
 
0.902
AFZ73147.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
     
  0.900
AFZ74515.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
     
  0.900
AFZ71853.1
Hypothetical protein.
  
    0.749
atpF
Archaeal/vacuolar-type H+-ATPase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
  0.744
AFZ73422.1
PFAM: Oligosaccharyl transferase STT3 subunit; TIGRFAM: oligosaccharyl transferase, archaeosortase system-associated.
  
  
 0.744
AFZ72522.1
Hypothetical protein.
  
     0.740
AFZ74914.1
PFAM: Protein of unknown function (DUF1119).
  
     0.740
AFZ74810.1
PFAM: Protein of unknown function (DUF552).
  
     0.734
AFZ74362.1
Hypothetical protein; PFAM: PRC-barrel domain.
  
     0.732
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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