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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ72971.1Putative metal-dependent membrane protease; PFAM: CAAX amino terminal protease family. (278 aa)    
Predicted Functional Partners:
AFZ73975.1
PFAM: YcaO-like family; TIGRFAM: uncharacterized domain; bacteriocin biosynthesis docking scaffold, SagD family.
 
  
 0.729
hjc
Holliday junction resolvase; A structure-specific endonuclease that resolves Holliday junction (HJ) intermediates during genetic recombination. Cleaves 4-way DNA junctions introducing paired nicks in opposing strands, leaving a 5'-terminal phosphate and a 3'-terminal hydroxyl group that are ligated to produce recombinant products; Belongs to the Holliday junction resolvase Hjc family.
 
     0.714
artA
Archaeosortase A, PGF-CTERM-specific; PFAM: Transmembrane exosortase (Exosortase_EpsH); TIGRFAM: exosortase/archaeosortase family protein; archaeosortase A, PGF-CTERM-specific.
  
    0.588
AFZ72972.1
PAS domain S-box; PFAM: HTH DNA binding domain; GAF domain; PAS fold; TIGRFAM: PAS domain S-box.
 
     0.557
AFZ71949.1
PFAM: Nitroreductase family; TIGRFAM: SagB-type dehydrogenase domain.
  
  
 0.554
AFZ71809.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter.
 
  
 0.542
AFZ71648.1
PFAM: Cytochrome oxidase assembly protein.
  
     0.497
AFZ71710.1
Hypothetical protein.
  
  
 0.473
AFZ72870.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; PFAM: ABC-2 type transporter.
  
  
 0.473
AFZ74231.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter; TIGRFAM: ABC transporter efflux protein, DrrB family.
  
  
 0.473
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.