STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ73096.1Putative DHD superfamily phosphohydrolase. (396 aa)    
Predicted Functional Partners:
AFZ71488.1
Methyltransferase family protein; PFAM: Methyltransferase domain.
  
     0.746
AFZ72704.1
DNA helicase, Rad3; PFAM: DEAD_2.
  
     0.707
AFZ71463.1
PFAM: Membrane protein of unknown function DUF63.
  
     0.700
AFZ72413.1
DNA/RNA helicase, superfamily I; PFAM: UvrD/REP helicase.
  
     0.685
AFZ71980.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.681
fau-1
Protein of unknown function (DUF402); Probable RNase involved in rRNA stability through maturation and/or degradation of precursor rRNAs. Binds to RNA in loop regions with AU-rich sequences.
  
     0.671
AFZ74731.1
Hypothetical protein.
  
     0.662
AFZ72158.1
PFAM: PBS lyase HEAT-like repeat.
  
     0.661
AFZ72938.1
Leader peptidase family protein; PFAM: Archaeal Peptidase A24 C-terminus Type II; Type IV leader peptidase family.
 
     0.660
AFZ72027.1
Putative Fe-S oxidoreductase; PFAM: Uncharacterised protein family (UPF0153).
  
     0.654
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.