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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ73229.1Putative membrane protein; PFAM: Rhomboid family; AN1-like Zinc finger. (319 aa)    
Predicted Functional Partners:
AFZ73584.1
Putative membrane-associated Zn-dependent protease; PFAM: Peptidase family M50.
 
  
 0.797
nfi
Deoxyinosine 3'endonuclease (endonuclease V); DNA repair enzyme involved in the repair of deaminated bases. Selectively cleaves double-stranded DNA at the second phosphodiester bond 3' to a deoxyinosine leaving behind the intact lesion on the nicked DNA.
 
     0.770
AFZ71754.1
PFAM: mttA/Hcf106 family; TIGRFAM: twin arginine-targeting protein translocase, TatA/E family.
  
 
 0.671
AFZ73232.1
DNA polymerase IV (family X); PFAM: PHP domain.
 
    0.649
AFZ73233.1
PFAM: Protein of unknown function DUF82.
 
     0.640
AFZ73231.1
Hypothetical protein.
       0.580
AFZ72236.1
PFAM: 5-formyltetrahydrofolate cyclo-ligase family.
  
    0.568
AFZ74159.1
PFAM: Protein of unknown function DUF88; TIGRFAM: TIGR00288 family protein.
 
   
 0.513
AFZ72147.1
Membrane protease subunit, stomatin/prohibitin; PFAM: SPFH domain / Band 7 family.
   
 0.468
AFZ73977.1
Membrane protease subunit, stomatin/prohibitin; PFAM: SPFH domain / Band 7 family.
   
 0.468
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.