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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ73380.1PFAM: Protein of unknown function (DUF422); TIGRFAM: carotene biosynthesis associated membrane protein. (300 aa)    
Predicted Functional Partners:
ubiA
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; PFAM: UbiA prenyltransferase family.
 
   
 0.962
AFZ73378.1
Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase.
 
   
 0.868
AFZ73382.1
Hypothetical protein.
 
     0.619
folP-2
Dihydropteroate synthase; PFAM: Pterin binding enzyme; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: dihydropteroate synthase; folylpolyglutamate synthase/dihydrofolate synthase.
  
   
 0.613
AFZ73377.1
Short-chain alcohol dehydrogenase; PFAM: short chain dehydrogenase.
 
     0.589
AFZ71648.1
PFAM: Cytochrome oxidase assembly protein.
  
   
 0.584
AFZ73385.1
Phytoene/squalene synthetase; PFAM: Squalene/phytoene synthase.
 
   
 0.572
AFZ71275.1
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
      
 0.540
AFZ72799.1
Orc1/cdc6 family replication initiation protein; Involved in regulation of DNA replication.
      
 0.540
folP
Dihydropteroate synthase; PFAM: Pterin binding enzyme; TIGRFAM: dihydropteroate synthase.
      
 0.536
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.