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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ73562.1Hypothetical protein. (282 aa)    
Predicted Functional Partners:
AFZ73564.1
Nitrous oxidase accessory protein; PFAM: NosL.
 
     0.959
AFZ72618.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
  
 
0.919
AFZ73563.1
ABC-type multidrug transport system, ATPase component; PFAM: ABC transporter.
 
     0.867
AFZ73554.1
Nitrous oxidase accessory protein; PFAM: NosL.
 
     0.826
AFZ73558.1
Putative lipoprotein involved in nitrous oxide reduction; PFAM: NosL.
 
     0.626
thiD
PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase.
       0.513
AFZ74442.1
Mn2+-dependent serine/threonine protein kinase; PFAM: RIO1 family.
  
     0.465
yqeC
TIGRFAM: probable selenium-dependent hydroxylase accessory protein YqeC.
  
     0.450
AFZ73559.1
ABC-type spermidine/putrescine transport system, ATPase component; PFAM: ABC transporter; TOBE domain.
       0.444
AFZ73560.1
NifC-like ABC-type porter; PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: NifC-like ABC-type porter.
       0.444
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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