Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFZ73568.1PFAM: Amino acid permease. (471 aa)    
Predicted Functional Partners:
AFZ73569.1
PFAM: Universal stress protein family.
       0.838
AFZ73567.1
EMAP domain-containing protein; PFAM: Putative tRNA binding domain.
 
     0.651
AFZ73276.1
PFAM: Protein kinase domain; FHA domain.
  
 
 0.609
AFZ71932.1
PFAM: Universal stress protein family.
    0.544
AFZ72227.1
PFAM: Universal stress protein family.
    0.528
AFZ73566.1
WD40-like repeat protein.
       0.437
AFZ71934.1
Arginine deiminase; PFAM: Amidinotransferase.
 
  
 0.428
AFZ74786.1
PFAM: Sodium:dicarboxylate symporter family.
 
 
 0.409
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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