Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AFZ72093.1 | AFZ72300.1 | Natgr_0852 | Natgr_1070 | Hypothetical protein. | PFAM: HTH DNA binding domain. | 0.723 |
AFZ72093.1 | AFZ73843.1 | Natgr_0852 | Natgr_2694 | Hypothetical protein. | Putative ATPase. | 0.738 |
AFZ72093.1 | AFZ73931.1 | Natgr_0852 | Natgr_2787 | Hypothetical protein. | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. | 0.708 |
AFZ72093.1 | AFZ74316.1 | Natgr_0852 | Natgr_3186 | Hypothetical protein. | Putative transcriptional regulator. | 0.662 |
AFZ72093.1 | AFZ74453.1 | Natgr_0852 | Natgr_3329 | Hypothetical protein. | PFAM: Domain of unknown function DUF87. | 0.499 |
AFZ72093.1 | AFZ74478.1 | Natgr_0852 | Natgr_3355 | Hypothetical protein. | PFAM: Thioredoxin. | 0.673 |
AFZ72093.1 | AFZ74512.1 | Natgr_0852 | Natgr_3392 | Hypothetical protein. | RecA-superfamily ATPase possibly involved in signal transduction; PFAM: KaiC. | 0.569 |
AFZ72093.1 | mre11 | Natgr_0852 | Natgr_0563 | Hypothetical protein. | DNA repair exonuclease; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity; Belongs to the MRE11/RAD32 family. | 0.595 |
AFZ72093.1 | rad50 | Natgr_0852 | Natgr_0564 | Hypothetical protein. | ATPase involved in DNA repair; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex. Belongs to the SMC family. RAD50 subfamily. | 0.655 |
AFZ72300.1 | AFZ72093.1 | Natgr_1070 | Natgr_0852 | PFAM: HTH DNA binding domain. | Hypothetical protein. | 0.723 |
AFZ72300.1 | AFZ73843.1 | Natgr_1070 | Natgr_2694 | PFAM: HTH DNA binding domain. | Putative ATPase. | 0.668 |
AFZ72300.1 | AFZ73931.1 | Natgr_1070 | Natgr_2787 | PFAM: HTH DNA binding domain. | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. | 0.555 |
AFZ72300.1 | AFZ74316.1 | Natgr_1070 | Natgr_3186 | PFAM: HTH DNA binding domain. | Putative transcriptional regulator. | 0.537 |
AFZ72300.1 | AFZ74453.1 | Natgr_1070 | Natgr_3329 | PFAM: HTH DNA binding domain. | PFAM: Domain of unknown function DUF87. | 0.530 |
AFZ72300.1 | AFZ74478.1 | Natgr_1070 | Natgr_3355 | PFAM: HTH DNA binding domain. | PFAM: Thioredoxin. | 0.548 |
AFZ72300.1 | AFZ74512.1 | Natgr_1070 | Natgr_3392 | PFAM: HTH DNA binding domain. | RecA-superfamily ATPase possibly involved in signal transduction; PFAM: KaiC. | 0.437 |
AFZ72300.1 | mre11 | Natgr_1070 | Natgr_0563 | PFAM: HTH DNA binding domain. | DNA repair exonuclease; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Mre11 binds to DSB ends and has both double-stranded 3'-5' exonuclease activity and single-stranded endonuclease activity; Belongs to the MRE11/RAD32 family. | 0.484 |
AFZ72300.1 | rad50 | Natgr_1070 | Natgr_0564 | PFAM: HTH DNA binding domain. | ATPase involved in DNA repair; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex. Belongs to the SMC family. RAD50 subfamily. | 0.536 |
AFZ73776.1 | AFZ73843.1 | Natgr_2627 | Natgr_2694 | NurA domain-containing protein; PFAM: NurA domain. | Putative ATPase. | 0.595 |
AFZ73776.1 | AFZ74453.1 | Natgr_2627 | Natgr_3329 | NurA domain-containing protein; PFAM: NurA domain. | PFAM: Domain of unknown function DUF87. | 0.561 |
page 1 of 4