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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ74202.1PDK repeat-containing protein; PFAM: PKD domain. (572 aa)    
Predicted Functional Partners:
AFZ74505.1
Acyl dehydratase.
   
    0.565
AFZ73916.1
ABC-type cobalt transport system, ATPase component; PFAM: ABC transporter.
   
    0.560
AFZ71909.1
Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, sugar binding domain.
  
    0.517
AFZ73359.1
Acyl dehydratase; PFAM: MaoC like domain.
   
    0.506
AFZ73688.1
ABC-type spermidine/putrescine transport system, permease component II; PFAM: Binding-protein-dependent transport system inner membrane component.
   
    0.502
gatC
glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family.
  
    0.462
AFZ74203.1
Hypothetical protein.
       0.461
pepF
PFAM: Oligopeptidase F; Peptidase family M3; TIGRFAM: oligoendopeptidase F.
   
  
 0.411
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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