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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ74225.1Hypothetical protein. (453 aa)    
Predicted Functional Partners:
AFZ74226.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
       0.773
AFZ74224.1
PFAM: Protein of unknown function (DUF354).
 
     0.762
AFZ74525.1
Hypothetical protein.
  
     0.691
AFZ73777.1
Hypothetical protein.
  
     0.500
AFZ71417.1
PFAM: N-6 DNA Methylase; Eco57I restriction endonuclease.
  
     0.492
AFZ74108.1
PFAM: Protein of unknown function (DUF354).
  
     0.477
AFZ73401.1
Transposase; PFAM: Putative transposase DNA-binding domain; Probable transposase.
  
     0.476
AFZ72934.1
Putative ATPase involved in replication control, Cdc46/Mcm family; PFAM: Helix-turn-helix; MCM2/3/5 family; TIGRFAM: intein N-terminal splicing region; intein C-terminal splicing region.
  
     0.433
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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