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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ74233.1PFAM: HTH DNA binding domain. (228 aa)    
Predicted Functional Partners:
AFZ73376.1
PFAM: Predicted membrane protein (DUF2339).
  
     0.663
AFZ72485.1
PFAM: EthD protein; TIGRFAM: conserved hypothetical protein.
  
     0.580
AFZ73274.1
Primosomal protein N' (replication factor Y) - superfamily II helicase; PFAM: FHA domain.
  
     0.541
AFZ74231.1
ABC-type multidrug transport system, permease component; PFAM: ABC-2 type transporter; TIGRFAM: ABC transporter efflux protein, DrrB family.
       0.541
AFZ74232.1
PFAM: ABC transporter; TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit.
       0.541
AFZ72152.1
Putative phosphohydrolase.
  
     0.539
AFZ74271.1
PFAM: HTH DNA binding domain.
  
     0.496
AFZ73558.1
Putative lipoprotein involved in nitrous oxide reduction; PFAM: NosL.
  
     0.495
AFZ71506.1
Beta-carotene 15,15''-monooxygenase, Brp/Blh family; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
  
   
 0.476
AFZ72475.1
PFAM: EthD protein; TIGRFAM: conserved hypothetical protein.
  
     0.473
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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