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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ74264.1Cytochrome c-type biogenesis protein CcmE; PFAM: CcmE. (162 aa)    
Predicted Functional Partners:
AFZ72485.1
PFAM: EthD protein; TIGRFAM: conserved hypothetical protein.
  
     0.666
AFZ72477.1
Putative domain HDIG-containing protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
  
     0.613
AFZ74263.1
Putative metal-binding protein; PFAM: Protein of unknown function, DUF.
       0.542
AFZ72982.1
Transposase; PFAM: Integrase core domain.
  
     0.541
AFZ72152.1
Putative phosphohydrolase.
  
     0.536
AFZ73334.1
Transposase; PFAM: Integrase core domain.
  
     0.533
AFZ72840.1
Transposase; PFAM: Integrase core domain.
  
     0.532
AFZ73864.1
Transposase; PFAM: DDE superfamily endonuclease.
  
     0.532
AFZ74258.1
Thiol:disulfide interchange protein; PFAM: Protein of unknown function, DUF255.
  
     0.530
AFZ72411.1
Transposase; PFAM: Integrase core domain.
  
     0.527
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.