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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ74375.1Transposase family protein; PFAM: Transposase DDE domain. (424 aa)    
Predicted Functional Partners:
AFZ72982.1
Transposase; PFAM: Integrase core domain.
  
     0.601
AFZ73864.1
Transposase; PFAM: DDE superfamily endonuclease.
  
     0.596
AFZ73334.1
Transposase; PFAM: Integrase core domain.
  
     0.593
AFZ72411.1
Transposase; PFAM: Integrase core domain.
  
     0.591
AFZ72591.1
Transposase; PFAM: Integrase core domain.
  
     0.591
AFZ74445.1
Transposase; PFAM: Integrase core domain.
  
     0.591
AFZ74757.1
Transposase; PFAM: Integrase core domain.
  
     0.591
AFZ72840.1
Transposase; PFAM: Integrase core domain.
  
     0.587
tbp-3
TATA-box binding protein (TBP), component of TFIID and TFIIIB; General factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Binds specifically to the TATA box promoter element which lies close to the position of transcription initiation.
       0.431
AFZ72027.1
Putative Fe-S oxidoreductase; PFAM: Uncharacterised protein family (UPF0153).
  
     0.416
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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