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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ74376.1Site-specific recombinase XerD; PFAM: Phage integrase, N-terminal SAM-like domain. (379 aa)    
Predicted Functional Partners:
AFZ72485.1
PFAM: EthD protein; TIGRFAM: conserved hypothetical protein.
  
     0.701
AFZ74455.1
Hypothetical protein.
  
     0.682
AFZ71728.1
PFAM: HTH DNA binding domain.
  
     0.677
AFZ72152.1
Putative phosphohydrolase.
  
     0.671
AFZ72475.1
PFAM: EthD protein; TIGRFAM: conserved hypothetical protein.
  
     0.662
AFZ74377.1
Hypothetical protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase.
 
     0.661
AFZ74462.1
PFAM: HTH DNA binding domain.
  
     0.617
AFZ72477.1
Putative domain HDIG-containing protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG.
  
     0.615
AFZ74463.1
PAS domain S-box; PFAM: HTH DNA binding domain; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.612
AFZ74101.1
Hypothetical protein.
  
     0.581
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
Server load: medium (74%) [HD]
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