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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ74830.1Site-specific recombinase XerD; PFAM: Phage integrase family. (251 aa)    
Predicted Functional Partners:
AFZ73905.1
Putative HAD superfamily hydrolase; PFAM: haloacid dehalogenase-like hydrolase.
  
     0.666
AFZ74831.1
Transposase family protein; PFAM: Transposase DDE domain.
 
     0.649
AFZ72093.1
Hypothetical protein.
 
     0.601
AFZ73843.1
Putative ATPase.
  
   
 0.490
AFZ73147.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
     0.469
AFZ72300.1
PFAM: HTH DNA binding domain.
  
     0.467
AFZ74478.1
PFAM: Thioredoxin.
  
     0.454
AFZ71506.1
Beta-carotene 15,15''-monooxygenase, Brp/Blh family; Catalyzes the cleavage of beta-carotene at its central double bond (15,15') to yield two molecules of all-trans-retinal. Belongs to the Brp/Blh beta-carotene diooxygenase family.
  
     0.438
AFZ74465.1
PFAM: Cytochrome C biogenesis protein transmembrane region.
  
     0.436
AFZ74515.1
PFAM: Peptidase S24-like; TIGRFAM: signal peptidase I, archaeal type.
  
     0.435
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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