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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ74871.1PFAM: SNARE associated Golgi protein. (239 aa)    
Predicted Functional Partners:
AFZ74872.1
Hypothetical protein.
       0.674
folP-2
Dihydropteroate synthase; PFAM: Pterin binding enzyme; Mur ligase family, glutamate ligase domain; Mur ligase middle domain; TIGRFAM: dihydropteroate synthase; folylpolyglutamate synthase/dihydrofolate synthase.
 
     0.556
AFZ73096.1
Putative DHD superfamily phosphohydrolase.
 
     0.534
AFZ72158.1
PFAM: PBS lyase HEAT-like repeat.
  
     0.531
AFZ74164.1
PFAM: HTH DNA binding domain.
  
     0.526
AFZ71980.1
PFAM: Acetyltransferase (GNAT) family.
  
     0.521
AFZ74700.1
PFAM: Spermine/spermidine synthase.
 
 
   0.519
AFZ74328.1
PFAM: HTH DNA binding domain.
  
     0.515
AFZ74463.1
PAS domain S-box; PFAM: HTH DNA binding domain; PAS fold; TIGRFAM: PAS domain S-box.
  
     0.509
AFZ74776.1
Putative peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase family; TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase AhpD family core domain.
 
  
 0.500
Your Current Organism:
Natronobacterium gregoryi
NCBI taxonomy Id: 797304
Other names: N. gregoryi SP2, Natronobacterium gregoryi ATCC 43098, Natronobacterium gregoryi JCM 8860, Natronobacterium gregoryi NCIMB 2189, Natronobacterium gregoryi SP2, Natronobacterium gregoryi str. SP2, Natronobacterium gregoryi strain SP2
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