STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsaDPutative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. (345 aa)    
Predicted Functional Partners:
EHM54318.1
Universal bacterial protein YeaZ; KEGG: pen:PSEEN1266 4.4e-32 glycoprotein endopeptidase metalloprotease K01423.
  
 
 0.988
EHM54918.1
Hydrolase, P-loop family; KEGG: ckp:ckrop_1741 3.4e-08 alanine racemase K01775; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.950
EHM54922.1
Roadblock/LC7 domain protein.
       0.773
EHM54924.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.773
EHM54921.1
GTP-binding domain protein; KEGG: rcu:RCOM_1485730 5.3e-06 protein with unknown function; Psort location: Cytoplasmic, score: 8.96.
       0.762
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
  
 0.650
lolD
Lipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
    0.627
pheS
KEGG: dno:DNO_1055 2.3e-115 pheS; phenylalanyl-tRNA synthetase, alpha subunit K01889; Psort location: Cytoplasmic, score: 10.00.
 
   
 0.615
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
 
      0.602
pheT
KEGG: dno:DNO_1056 1.7e-222 pheT; phenylalanyl-tRNA synthetase, beta subunit K01890; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.601
Your Current Organism:
Cardiobacterium valvarum
NCBI taxonomy Id: 797473
Other names: C. valvarum F0432, Cardiobacterium valvarum F0432, Cardiobacterium valvarum str. F0432, Cardiobacterium valvarum strain F0432
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