STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM52785.1Hypothetical protein; Overlaps another CDS with the same product name. (196 aa)    
Predicted Functional Partners:
EHM52784.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00; overlaps another CDS with the same product name.
 
     0.949
EHM49693.1
SMI1 / KNR4 family protein; KEGG: der:Dere_GG14176 8.8e-07 GG14176 gene product from transcript GG14176-RA; K08252 receptor protein-tyrosine kinase; Psort location: Extracellular, score: 9.64.
  
     0.747
EHM55747.1
Hypothetical protein.
  
     0.745
EHM52786.1
OsmC-like protein.
       0.727
EHM53138.1
Type I secretion target GGXGXDXXX repeat-containing domain protein; KEGG: sde:Sde_2873 1.3e-20 poly(beta-D-mannuronate) lyase K01729; Psort location: Extracellular, score: 10.00.
  
     0.721
EHM52362.1
Gram-negative porin; Psort location: OuterMembrane, score: 8.28.
  
     0.714
EHM52901.1
Glycosyl hydrolase family 16; KEGG: sde:Sde_2873 3.2e-21 poly(beta-D-mannuronate) lyase K01729.
  
     0.711
EHM55514.1
Gram-negative porin; Psort location: OuterMembrane, score: 10.00.
  
     0.703
EHM52206.1
Prepilin-type cleavage/methylation protein.
  
     0.695
EHM55683.1
Hypothetical protein; KEGG: cco:CCC13826_0483 3.4e-08 phenylalanyl-tRNA synthetase alpha chain (phenylalanine--tRNA ligase alpha chain; PheRS).
  
     0.684
Your Current Organism:
Cardiobacterium valvarum
NCBI taxonomy Id: 797473
Other names: C. valvarum F0432, Cardiobacterium valvarum F0432, Cardiobacterium valvarum str. F0432, Cardiobacterium valvarum strain F0432
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.