Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpmBRibosomal protein L28; KEGG: apb:SAR116_1905 5.2e-13 LSU ribosomal protein L28P K02902; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)    
Predicted Functional Partners:
rpmG
Ribosomal protein L33; KEGG: apb:SAR116_0619 8.5e-13 ribosomal protein L33 K02913; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL33 family.
 
 
 0.999
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
 
 
 0.997
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
  
 
 0.997
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 
 0.996
rpmA
Ribosomal protein L27; KEGG: apb:SAR116_1855 3.1e-24 ribosomal protein L27 K02899; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.996
rpmF
Ribosomal protein L32; KEGG: apb:SAR116_0011 5.6e-09 ribosomal protein L32 K02911; Psort location: Cytoplasmic, score: 9.26; Belongs to the bacterial ribosomal protein bL32 family.
  
 
 0.996
rplM
Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
  
 
 0.996
EHM52128.1
Ribosomal protein S20; KEGG: rcu:RCOM_2071510 6.1e-07 formamidopyrimidine-DNA glycosylase, putative; Psort location: Cytoplasmic, score: 9.26.
  
 
 0.996
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
 
 0.995
rpsH
Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
   
 
 0.995
Your Current Organism:
Cardiobacterium valvarum
NCBI taxonomy Id: 797473
Other names: C. valvarum F0432, Cardiobacterium valvarum F0432, Cardiobacterium valvarum str. F0432, Cardiobacterium valvarum strain F0432
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