STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01623.1Nitroreductase family protein; KEGG: dth:DICTH_0759 5.7e-07 NADH dehydrogenase (h(2)o(2) forming nadh oxidase). (153 aa)    
Predicted Functional Partners:
EHL95981.1
Riboflavin biosynthesis protein RibF; KEGG: lbr:LVIS_1332 6.3e-88 FAD synthase; K11753 riboflavin kinase / FMN adenylyltransferase; Psort location: Cytoplasmic, score: 9.97; Belongs to the ribF family.
    
 0.853
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
    0.716
menE
O-succinylbenzoate-CoA ligase; Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl-CoA (OSB-CoA); Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily.
   
 
 0.708
EHM01093.1
ABC-2 type transporter; KEGG: lpj:JDM1_1639 6.2e-08 hpk6; histidine protein kinase; sensor protein; K07778 two-component system, NarL family, sensor histidine kinase DesK; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.616
EHL96780.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.579
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
   
 
 0.548
EHM01622.1
Mannose-6-phosphate isomerase, class I; KEGG: lme:LEUM_1769 2.4e-88 phosphomannose isomerase; K01809 mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.
  
    0.541
EHM01624.1
Hypothetical protein.
       0.516
EHL97419.1
KEGG: aai:AARI_02020 2.8e-35 putative ABC transporter, ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.499
EHL99763.1
Putative glutamate synthase [NADPH], large subunit; KEGG: lca:LSEI_2556 0. glutamate synthase domain-containing 3; K00265 glutamate synthase (NADPH/NADH) large chain; Psort location: Cytoplasmic, score: 9.26.
     
 0.453
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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