STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01632.1Citrate transporter; KEGG: cdi:DIP1584 0.0010 putative lipoprotein signal peptidase; K03101 signal peptidase II; Psort location: CytoplasmicMembrane, score: 10.00. (430 aa)    
Predicted Functional Partners:
EHM01631.1
AP endonuclease, family 2; KEGG: hse:Hsero_1499 1.8e-26 sugar phosphate isomerase/epimerase; Psort location: Cytoplasmic, score: 9.97.
 
     0.958
EHM01633.1
KEGG: lbr:LVIS_0441 2.7e-110 2-dehydro-3-deoxygluconokinase; K00874 2-dehydro-3-deoxygluconokinase; Psort location: Cytoplasmic, score: 9.97.
 
     0.938
EHM01634.1
Orotidine 5'-phosphate decarboxylase/HUMPS family protein; KEGG: lbr:LVIS_0442 1.0e-64 3-hexulose-6-phosphate synthase related protein; K08093 3-hexulose-6-phosphate synthase; Psort location: Cytoplasmic, score: 8.96.
 
     0.903
EHM01635.1
6-phospho 3-hexuloisomerase; KEGG: lbr:LVIS_0443 2.1e-71 sugar phosphate isomerase; K08094 6-phospho-3-hexuloisomerase.
 
     0.898
EHM01636.1
KEGG: dtu:Dtur_1736 2.8e-30 transcriptional regulator, LacI family K02529; Psort location: Cytoplasmic, score: 9.97.
 
     0.831
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.