STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01442.1Hydrolase, HD family; KEGG: clo:HMPREF0868_0799 1.6e-18 nadD; nicotinate-nucleotide adenylyltransferase K00969; Psort location: Cytoplasmic, score: 8.96. (203 aa)    
Predicted Functional Partners:
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
 
 0.997
EHM01441.1
Iojap-like protein; KEGG: mul:MUL_3692 5.0e-05 nadD; bifunctional nicotinate-nucleotide adenylyltransferase NadD/hypothetical protein; K00969 nicotinate-nucleotide adenylyltransferase.
 
    0.946
EHM01440.1
Hypothetical protein; KEGG: apb:SAR116_1850 0.00020 iojap-related protein K09710.
  
    0.938
EHM01446.1
HAD phosphatase, family IIIA; KEGG: spd:SPD_1560 1.6e-34 hypothetical protein K07015.
 
  
 0.916
tmcAL
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
 
  
 0.904
EHL95604.1
Competence/damage-inducible protein CinA domain protein; Belongs to the CinA family.
    
  0.899
EHM01444.1
RNA-binding protein, YhbY family.
  
    0.891
EHM01445.1
Ribosome biogenesis GTPase YqeH; KEGG: lre:Lreu_1237 3.7e-138 GTP-binding protein YqeH K06948; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.882
EHM01439.1
Methyltransferase domain protein; KEGG: lpl:lp_1533 2.3e-67 methyltransferase (putative) K00599; Psort location: Cytoplasmic, score: 9.97.
  
    0.857
polC
DNA polymerase III, alpha subunit; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
     0.730
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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