STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01445.1Ribosome biogenesis GTPase YqeH; KEGG: lre:Lreu_1237 3.7e-138 GTP-binding protein YqeH K06948; Psort location: Cytoplasmic, score: 8.96. (378 aa)    
Predicted Functional Partners:
EHM01444.1
RNA-binding protein, YhbY family.
 
  
 0.974
EHM01440.1
Hypothetical protein; KEGG: apb:SAR116_1850 0.00020 iojap-related protein K09710.
 
 
 0.965
EHM01441.1
Iojap-like protein; KEGG: mul:MUL_3692 5.0e-05 nadD; bifunctional nicotinate-nucleotide adenylyltransferase NadD/hypothetical protein; K00969 nicotinate-nucleotide adenylyltransferase.
  
 
 0.958
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
    0.923
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
   0.922
EHM01446.1
HAD phosphatase, family IIIA; KEGG: spd:SPD_1560 1.6e-34 hypothetical protein K07015.
 
  
 0.921
rpmD
Ribosomal protein L30; KEGG: apb:SAR116_2409 0.0011 ribosomal protein L30 K02907; Psort location: Cytoplasmic, score: 9.26.
   
 
 0.902
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
  
 
 0.886
EHM01442.1
Hydrolase, HD family; KEGG: clo:HMPREF0868_0799 1.6e-18 nadD; nicotinate-nucleotide adenylyltransferase K00969; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.882
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
  
 
 
 0.868
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.