STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBtRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (216 aa)    
Predicted Functional Partners:
EHM01464.1
Bacterial ABC transporter protein EcsB; Psort location: CytoplasmicMembrane, score: 10.00.
       0.835
EHM01465.1
ABC transporter, ATP-binding protein EcsA; KEGG: snc:HMPREF0837_10816 9.7e-76 skfE; putative sulfate-transporting ATPase; Psort location: Cytoplasmic, score: 9.12.
       0.835
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.
  
 
 0.831
EHL96075.1
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.740
rpmD
Ribosomal protein L30; KEGG: apb:SAR116_2409 0.0011 ribosomal protein L30 K02907; Psort location: Cytoplasmic, score: 9.26.
   
    0.691
EHL95899.1
NOL1/NOP2/sun family protein; KEGG: lbr:LVIS_0862 1.7e-133 tRNA and rRNA cytosine-C5-methylase; K00599; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.665
EHL98857.1
Hypothetical protein; KEGG: lrf:LAR_0091 3.7e-18 seryl-tRNA synthetase; K01875 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 9.26.
   
 
 0.661
serS
serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
   
 
 0.661
EHM01466.1
Protein hit; KEGG: lsl:LSL_0477 3.4e-48 bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) K02503; Psort location: Cytoplasmic, score: 9.26.
       0.655
EHL99527.1
KEGG: lsl:LSL_1466 6.5e-102 nagA; N-acetylglucosamine-6-phosphate deacetylase K01443; Psort location: Cytoplasmic, score: 9.97.
      0.636
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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