STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01479.1Aspartate racemase; KEGG: lsl:LSL_0018 7.1e-80 racX; aspartate racemase K01779; Psort location: Cytoplasmic, score: 8.96; Belongs to the aspartate/glutamate racemases family. (239 aa)    
Predicted Functional Partners:
EHM01482.1
Asparagine synthase; KEGG: lbr:LVIS_1501 4.8e-280 asparagine synthase (glutamine-hydrolyzing); K01953 asparagine synthase (glutamine-hydrolysing); Psort location: Cytoplasmic, score: 9.97.
 
  
 0.990
EHM01480.1
Hypothetical protein; KEGG: mae:Maeo_0044 6.8e-07 carbamoyl-phosphate synthase L chain ATP-binding; K01955 carbamoyl-phosphate synthase large subunit; Psort location: Cytoplasmic, score: 8.96.
 
     0.957
pyrB
KEGG: lpl:lp_2703 1.2e-98 pyrB; aspartate carbamoyltransferase catalytic subunit K00609; Psort location: Cytoplasmic, score: 9.97; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.939
EHL95724.1
Putative aspartate ammonia-lyase.
   
 0.928
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of L-lysine to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan; Belongs to the MurCDEF family. MurE subfamily.
 
   
 0.911
EHL98757.1
L-asparaginase, type II; KEGG: lbr:LVIS_1836 1.9e-127 L-asparaginase; K01424 L-asparaginase; Psort location: Cytoplasmic, score: 9.97.
    
 0.910
EHL95866.1
KEGG: lrh:LGG_01594 8.1e-56 hutG; N-formylglutamate amidohydrolase; K01479 formiminoglutamase; Psort location: Cytoplasmic, score: 8.96.
    
  0.849
EHL95223.1
Amidophosphoribosyltransferase; KEGG: lpl:lp_2723 2.0e-162 purF; amidophosphoribosyltransferase K00764; Psort location: Cytoplasmic, score: 9.97.
   
 
  0.795
purE
Phosphoribosylaminoimidazole carboxylase, catalytic subunit; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
  
   0.719
glmS
Glutamine-fructose-6-phosphate transaminase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
   
  0.669
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.