STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01178.1KEGG: eci:UTI89_C4210 9.7e-44 yicJ; putative transporter K03292; Psort location: CytoplasmicMembrane, score: 10.00. (451 aa)    
Predicted Functional Partners:
EHM01179.1
Hypothetical protein; KEGG: bde:BDP_2092 7.4e-85 alpha-galactosidase.
  
    0.778
EHM01180.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.645
EHM01175.1
Hypothetical protein.
 
     0.545
EHM01173.1
Hypothetical protein; KEGG: cbe:Cbei_4441 2.4e-33 glycoside hydrolase, clan GH-D; K07407 alpha-galactosidase.
  
    0.480
EHM01182.1
KEGG: bra:BRADO6253 8.9e-18 putative short-chain dehydrogenase/reductase family protein; Psort location: CytoplasmicMembrane, score: 9.82.
  
    0.421
EHM01181.1
Hypothetical protein.
       0.418
EHL98640.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.46.
  
     0.417
EHM01176.1
KEGG: sdn:Sden_2531 0.00027 Ada, metal-binding; K13529 AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II.
  
     0.413
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.