STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01181.1Hypothetical protein. (46 aa)    
Predicted Functional Partners:
EHM01182.1
KEGG: bra:BRADO6253 8.9e-18 putative short-chain dehydrogenase/reductase family protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.773
EHM01183.1
Transcriptional regulator, TetR family; Psort location: Cytoplasmic, score: 8.96.
       0.521
EHM01180.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.489
EHM01178.1
KEGG: eci:UTI89_C4210 9.7e-44 yicJ; putative transporter K03292; Psort location: CytoplasmicMembrane, score: 10.00.
       0.418
EHM01179.1
Hypothetical protein; KEGG: bde:BDP_2092 7.4e-85 alpha-galactosidase.
       0.418
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.