STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01184.1KEGG: bwe:BcerKBAB4_3508 4.6e-12 AraC family transcriptional regulator; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 9.26. (317 aa)    
Predicted Functional Partners:
EHL95943.1
Hypothetical protein; KEGG: snc:HMPREF0837_11413 4.4e-19 rpoD; DNA-directed RNA polymerase sigma subunit RpoD K03086; Psort location: Cytoplasmic, score: 9.26.
   
 
 0.784
EHL95944.1
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.784
EHM00110.1
KEGG: bcu:BCAH820_3221 1.3e-11 transcriptional regulator, AraC family; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 9.26.
  
    0.729
EHM00447.1
Transcriptional regulator, AraC family; KEGG: lla:L0149 1.6e-11 adaA; methylphosphotriester-DNA alkyltransferase; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 9.97.
 
 
0.675
EHL99143.1
Transcriptional regulator, AraC family; KEGG: lla:L0149 2.7e-16 adaA; methylphosphotriester-DNA alkyltransferase; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase.
 
 
0.605
EHL97569.1
Transcriptional regulator, AraC family; KEGG: lla:L0149 3.8e-17 adaA; methylphosphotriester-DNA alkyltransferase; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase.
 
 
0.601
EHL99000.1
Transporter, major facilitator family protein; KEGG: xau:Xaut_0826 6.8e-05 sugar transporter; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.549
lexA
Repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
   
   0.546
EHM01173.1
Hypothetical protein; KEGG: cbe:Cbei_4441 2.4e-33 glycoside hydrolase, clan GH-D; K07407 alpha-galactosidase.
 
     0.541
EHM01176.1
KEGG: sdn:Sden_2531 0.00027 Ada, metal-binding; K13529 AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II.
 
 
0.532
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.