STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01093.1ABC-2 type transporter; KEGG: lpj:JDM1_1639 6.2e-08 hpk6; histidine protein kinase; sensor protein; K07778 two-component system, NarL family, sensor histidine kinase DesK; Psort location: CytoplasmicMembrane, score: 10.00. (298 aa)    
Predicted Functional Partners:
EHM01092.1
Hypothetical protein; KEGG: pmf:P9303_06461 9.3e-11 ccmA; putative multidrug efflux ABC transporter K09687.
 
 
 0.969
EHM01091.1
Hypothetical protein; KEGG: dvm:DvMF_0118 1.1e-14 ABC transporter related; K09817 zinc transport system ATP-binding protein.
 
 
 0.951
EHM01094.1
Histidine kinase; KEGG: lcb:LCABL_14440 1.2e-61 hpk6; histidine protein kinase; sensor protein K07778; Psort location: CytoplasmicMembrane, score: 9.82.
 
  
 0.915
EHM01095.1
Response regulator receiver domain protein; KEGG: fal:FRAAL4813 1.5e-38 putative two-component system response regulator K07693; Psort location: Cytoplasmic, score: 9.26.
 
   
 0.906
EHM01623.1
Nitroreductase family protein; KEGG: dth:DICTH_0759 5.7e-07 NADH dehydrogenase (h(2)o(2) forming nadh oxidase).
  
  
 0.616
EHM00033.1
Putative oxygen-insensitive NADPH nitroreductase; KEGG: lbr:LVIS_0103 3.0e-72 nitroreductase; K00540; Belongs to the flavin oxidoreductase frp family.
  
  
 0.616
EHL99309.1
Nitroreductase family protein; KEGG: lsl:LSL_0134 5.7e-71 NAD(P)H-dependent quinone reductase K00540; Psort location: Cytoplasmic, score: 9.26.
  
  
 0.616
EHL98856.1
Putative oxygen-insensitive NADPH nitroreductase; KEGG: lre:Lreu_1560 1.2e-84 nitroreductase; K00540; Belongs to the flavin oxidoreductase frp family.
  
  
 0.616
EHL97418.1
KEGG: lmh:LMHCC_1698 8.2e-63 Nod factor export ATP-binding protein I (nodulation ATP-binding protein I); Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.585
EHM01082.1
KEGG: llk:LLKF_0994 1.1e-81 yjjC; ABC transporter ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.82.
  
 
 0.490
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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