STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM01099.1KEGG: apb:SAR116_0310 9.0e-08 transcriptional regulator, GntR family; Psort location: Cytoplasmic, score: 9.97. (224 aa)    
Predicted Functional Partners:
EHL98479.1
Mannitol dehydrogenase domain protein; KEGG: lbr:LVIS_0139 8.4e-196 fructuronate reductase; K00040 fructuronate reductase; Psort location: Cytoplasmic, score: 9.26.
 
   
 0.745
EHM00854.1
Transcriptional regulator, GntR family; KEGG: hiq:CGSHiGG_02770 7.2e-16 D-mannonate oxidoreductase K13637; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.581
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.553
EHM01098.1
KxYKxGKxW signal domain protein; KEGG: ebi:EbC_39640 8.9e-29 rpeA; IgA1 protease precursor; K12684 serine protease autotransporter.
       0.475
prmC
protein-(glutamine-N5) methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
    
   0.465
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.