STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM00795.1DNA-binding helix-turn-helix protein; Psort location: CytoplasmicMembrane, score: 10.00. (203 aa)    
Predicted Functional Partners:
EHL95604.1
Competence/damage-inducible protein CinA domain protein; Belongs to the CinA family.
    
 0.857
EHL96992.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.760
EHM00794.1
NLPA lipoprotein; Psort location: CytoplasmicMembrane, score: 9.82.
       0.421
metN
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
       0.409
EHM00793.1
Putative D-methionine transport system permease protein MetI; KEGG: lsg:lse_1341 2.8e-14 bilEB; glycine betaine/L-proline ABC transporter, permease/glycine betaine/L-proline-binding protein K05845:K05846; Psort location: CytoplasmicMembrane, score: 10.00.
       0.409
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.