STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM00764.1Putative stage III sporulation protein E; KEGG: pen:PSEEN2212 7.2e-103 ftsK; cell division protein FtsK K03466; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the FtsK/SpoIIIE/SftA family. (775 aa)    
Predicted Functional Partners:
EHM00486.1
Stage 0 sporulation protein J; KEGG: apb:SAR116_1649 4.4e-42 ParB-like partition protein K03497; Psort location: Cytoplasmic, score: 9.97; Belongs to the ParB family.
  
  
 0.775
divIB
Cell division protein FtsQ; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
   
 
 0.752
EHM00765.1
RNA methyltransferase, TrmH family, group 2; Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.710
EHM00766.1
Hypothetical protein; KEGG: lbr:LVIS_1460 1.5e-77 SAM-dependent methyltransferase; K00563 rRNA (guanine-N1-)-methyltransferase; Psort location: Cytoplasmic, score: 9.97.
       0.673
nadK
NAD(+)/NADH kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.
     
 0.673
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
   
 0.664
EHM00769.1
RelA/SpoT domain protein; KEGG: lpj:JDM1_1860 4.9e-81 GTP pyrophosphokinase (putative); K07816 putative GTP pyrophosphokinase; Psort location: Cytoplasmic, score: 8.96.
       0.663
EHM00767.1
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.656
EHM01098.1
KxYKxGKxW signal domain protein; KEGG: ebi:EbC_39640 8.9e-29 rpeA; IgA1 protease precursor; K12684 serine protease autotransporter.
    
   0.623
EHM00451.1
Hypothetical protein.
    
   0.623
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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