STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM00480.1Putative permease; KEGG: bal:BACI_c03200 2.4e-70 guanine-hypoxanthine permease K06901; Psort location: CytoplasmicMembrane, score: 10.00. (437 aa)    
Predicted Functional Partners:
EHM00481.1
Putative cytidine/uridine-specific hydrolase; KEGG: lbr:LVIS_2069 1.1e-131 ribonucleoside hydrolase RihC; K01239 purine nucleosidase; Psort location: Cytoplasmic, score: 8.96.
       0.688
EHM00479.1
Nucleoside transporter, NupC family; Psort location: CytoplasmicMembrane, score: 10.00.
       0.687
EHM00482.1
Hypothetical protein.
       0.555
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.452
EHM00478.1
Phosphopentomutase; KEGG: lsa:LSA0796 8.4e-35 deoB; phosphopentomutase K01839; Psort location: Cytoplasmic, score: 8.96.
       0.424
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.