STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM00431.1Isochorismatase family protein; KEGG: pfr:PFREUD_18100 7.7e-67 isochorismatase hydrolase; Psort location: Cytoplasmic, score: 8.96. (205 aa)    
Predicted Functional Partners:
EHM00432.1
Hypothetical protein.
       0.773
EHL96833.1
Hypothetical protein; KEGG: pfr:PFREUD_18110 9.8e-83 pf1655; carboxylic ester hydrolase.
 
     0.584
EHM00433.1
Hypothetical protein.
       0.551
gpsA
KEGG: lbr:LVIS_0643 2.8e-124 glycerol-3-phosphate dehydrogenase; K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+); Psort location: Cytoplasmic, score: 9.26; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
   0.482
EHM00941.1
Transcriptional regulator, Sir2 family; KEGG: lre:Lreu_0208 3.8e-74 NAD-dependent deacetylase; K12410 NAD-dependent deacetylase; Psort location: Cytoplasmic, score: 9.26.
  
 0.481
EHL96772.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.462
EHL95693.1
Hypothetical protein.
  
     0.455
EHL95710.1
Nicotinate-nucleotide diphosphorylase; Belongs to the NadC/ModD family.
   
 0.432
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.431
EHM00498.1
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
  
 
 0.425
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.