STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM00081.1NlpC/P60 family protein. (345 aa)    
Predicted Functional Partners:
EHM00080.1
Hypothetical protein; KEGG: lla:L87107 0.0018 pspA; glucosyltransferase-S; Psort location: CytoplasmicMembrane, score: 9.86.
 
 
  0.967
EHL95965.1
KEGG: lpj:JDM1_1672 1.4e-69 lytH; N-acetylmuramoyl-L-alanine amidase; K01448 N-acetylmuramoyl-L-alanine amidase.
  
 
 0.953
EHL98216.1
Hypothetical protein; KEGG: csa:Csal_1592 1.3e-17 ribonuclease E K08300; Psort location: Cytoplasmic, score: 9.26.
 
 
 0.878
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
    
  0.867
EHM00036.1
Hypothetical protein; KEGG: dme:Dmel_CG33103 2.0e-20 Ppn; Papilin; Psort location: OuterMembrane, score: 9.95.
  
 
 0.860
EHL96126.1
KxYKxGKxW signal domain protein; KEGG: spo:SPAPB1E7.04c 1.5e-38 chitinase (predicted).
  
 
 0.860
EHM00634.1
Hypothetical protein; KEGG: par:Psyc_1270 0.0075 algW; serine protease; K04691 serine protease DegS; Psort location: CytoplasmicMembrane, score: 10.00.
    
  0.848
EHL98071.1
Serine protease do-like HtrA; KEGG: lbr:LVIS_0034 4.4e-135 trypsin-like serine protease; K01362.
    
  0.848
EHL98339.1
KEGG: lbr:LVIS_1883 1.5e-102 N-acetylmuramoyl-L-alanine amidase; K01227 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K01447; Psort location: Extracellular, score: 9.65.
 
 
 0.762
EHM00434.1
KEGG: lbr:LVIS_1883 4.6e-53 N-acetylmuramoyl-L-alanine amidase; K01227 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K01447.
 
 
 0.745
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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