STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM00092.1KEGG: eck:EC55989_2654 4.1e-52 lacY; galactoside permease K02532; Psort location: CytoplasmicMembrane, score: 10.00. (423 aa)    
Predicted Functional Partners:
EHM00091.1
Glycosyl hydrolase, family 43; KEGG: llk:LLKF_1620 7.3e-126 araF; alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.956
EHM00090.1
Transcriptional regulator, ArsR family; Psort location: Cytoplasmic, score: 8.96.
 
     0.841
EHL95155.1
Nitrate reductase molybdenum cofactor assembly chaperone; KEGG: lpl:lp_1499 3.9e-63 narJ; nitrate reductase, delta chain K00373; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.800
EHL95156.1
KEGG: lpl:lp_1500 4.0e-70 narI; nitrate reductase, gamma chain K00374; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.751
EHL95157.1
Hypothetical protein; KEGG: lrf:LAR_0936 4.8e-19 nitrate reductase gamma subunit; K00374 nitrate reductase 1, gamma subunit; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
 0.751
EHL95153.1
KEGG: lpj:JDM1_1253 0. narG; nitrate reductase, alpha chain; K00370 nitrate reductase 1, alpha subunit; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.732
EHL95154.1
KEGG: lpj:JDM1_1254 6.4e-269 narH; nitrate reductase, beta chain; K00371 nitrate reductase 1, beta subunit.
    
 0.681
EHM00440.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.671
EHL96296.1
Phage major capsid protein, HK97 family; KEGG: bao:BAMF_3086 3.4e-14 seryl-tRNA synthetase seryl-tRNA(Ser/sec) synthetase; serine-tRNA ligase; SerRS.
   
    0.648
EHM01176.1
KEGG: sdn:Sden_2531 0.00027 Ada, metal-binding; K13529 AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II.
 
     0.596
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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