STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM00099.1KEGG: sds:SDEG_0144 1.7e-11 membrane-bound protease CAAX family K07052; Psort location: CytoplasmicMembrane, score: 10.00. (225 aa)    
Predicted Functional Partners:
EHM00100.1
Hypothetical protein; KEGG: vfi:VF_1261 6.6e-06 lactoylglutathione lyase family protein; Psort location: Cytoplasmic, score: 8.96.
       0.773
EHL97423.1
Hypothetical protein; KEGG: lbr:LVIS_1825 8.9e-17 D-alanyl-D-alanine carboxypeptidase; K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Psort location: Periplasmic, score: 9.84.
  
     0.742
EHL98574.1
Hypothetical protein; KEGG: sce:YPR204W 1.2e-05 Helicase-like protein encoded within the telomeric Y' element; Psort location: Extracellular, score: 9.65.
  
     0.735
EHM01646.1
Hypothetical protein; KEGG: ava:Ava_4725 1.4e-05 polymorphic membrane protein.
  
     0.714
EHM01645.1
S-layer family protein; KEGG: chu:CHU_3220 2.9e-05 hypothetical protein K01238.
  
     0.710
EHL95108.1
Hypothetical protein.
  
     0.667
EHL99727.1
S-layer domain protein; Psort location: Extracellular, score: 9.64.
  
     0.666
EHL98339.1
KEGG: lbr:LVIS_1883 1.5e-102 N-acetylmuramoyl-L-alanine amidase; K01227 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K01447; Psort location: Extracellular, score: 9.65.
  
     0.653
EHM00102.1
Hypothetical protein; KEGG: cfa:482756 0.0095 similar to Maltase-glucoamylase, intestinal; K01178 glucoamylase K01187; Psort location: Extracellular, score: 9.64.
 
     0.628
EHM00434.1
KEGG: lbr:LVIS_1883 4.6e-53 N-acetylmuramoyl-L-alanine amidase; K01227 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase K01447.
  
     0.618
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.