STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM00024.1KEGG: lsg:lse_0373 2.5e-45 polysaccharide deacetylase family protein. (347 aa)    
Predicted Functional Partners:
EHL96162.1
Putative poly-beta-1,6 N-acetyl-D-glucosamine synthase; KEGG: bmq:BMQ_3833 5.4e-66 glycosyl transferase, family 2; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 0.975
EHL98908.1
Glycosyltransferase, group 2 family protein; KEGG: llk:LLKF_1331 5.1e-26 ymjE; family 2 glycosyltransferase; Psort location: CytoplasmicMembrane, score: 9.46.
 
 
 0.768
EHM00023.1
Hypothetical protein.
       0.636
EHL95353.1
Hypothetical protein; KEGG: ddi:DDB_G0271052 0.0076 CHR group protein; K11647 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4; Psort location: Extracellular, score: 9.64.
  
  
 0.540
EHL95350.1
Hypothetical protein; KEGG: afw:Anae109_3812 1.1e-08 dimethyladenosine transferase; K02528 dimethyladenosine transferase; Psort location: Extracellular, score: 8.44.
  
  
 0.535
EHL97722.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase; KEGG: lmh:LMHCC_2846 4.3e-34 autolysin.
  
   
 0.531
EHL96077.1
Kinase domain protein; KEGG: lbr:LVIS_0962 3.2e-164 serine/threonine kinase protein; K08884 serine/threonine protein kinase, bacterial; Psort location: CytoplasmicMembrane, score: 9.82.
 
 
 0.500
EHM00168.1
Hypothetical protein.
  
     0.489
EHL98574.1
Hypothetical protein; KEGG: sce:YPR204W 1.2e-05 Helicase-like protein encoded within the telomeric Y' element; Psort location: Extracellular, score: 9.65.
  
     0.408
EHL96171.1
Hypothetical protein; KEGG: xne:XNC1_1839 1.4e-07 pbgE1; 4-amino-4-deoxy-L-arabinose transferase (lipid A modification); K07264 4-amino-4-deoxy-L-arabinose transferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.408
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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