STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHM00027.1Putative 3-dehydroquinate dehydratase, type I; KEGG: lpl:lp_3493 4.4e-32 aroD; 3-dehydroquinate dehydratase K03785. (138 aa)    
Predicted Functional Partners:
EHM00026.1
Hypothetical protein; KEGG: lpj:JDM1_2785 2.7e-16 aroD; 3-dehydroquinate dehydratase; K03785 3-dehydroquinate dehydratase I; Psort location: Cytoplasmic, score: 8.96.
     0.972
aroE-2
Putative shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
  
 0.957
aroE
Putative shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
  
 0.951
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
 
 0.903
EHM00028.1
Transporter, major facilitator family protein; KEGG: rcu:RCOM_2110210 1.6e-08 Multidrug resistance protein mdtM, putative; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.530
EHM00025.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.517
EHL95370.1
Hypothetical protein; KEGG: rcu:RCOM_2110210 0.00076 Multidrug resistance protein mdtM, putative; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.498
EHL95369.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.487
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
 0.465
EHL95309.1
Transporter, major facilitator family protein; KEGG: bmd:BMD_0780 0.00013 narK; nitrite extrusion protein K02575; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.457
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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