STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EHL99853.1Phage terminase, large subunit, PBSX family; Psort location: Cytoplasmic, score: 8.96. (351 aa)    
Predicted Functional Partners:
EHL99851.1
Terminase small subunit; Psort location: Cytoplasmic, score: 8.96.
 
  
 0.953
EHL99852.1
Hypothetical protein.
      0.929
EHL99854.1
Phage portal protein, SPP1 family.
 
  
 0.925
EHL99855.1
Hypothetical protein.
       0.782
EHL96593.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.620
EHL96545.1
Phage tail tape measure protein, TP901 family; KEGG: bsu:BSU21350 0.0064 yomI; SPbeta phage protein; lytic transglycosylase; Psort location: OuterMembrane, score: 9.49.
  
     0.544
EHM01283.1
Hypothetical protein.
 
  
 0.535
EHL96542.1
Hypothetical protein.
 
     0.514
EHL99850.1
dUTP diphosphatase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
       0.505
EHL96602.1
Bacterial group 2 Ig-like protein; KEGG: pjd:Pjdr2_1124 4.8e-15 alpha-N-arabinofuranosidase; Psort location: Extracellular, score: 9.64.
 
    0.500
Your Current Organism:
Lactobacillus parafarraginis
NCBI taxonomy Id: 797515
Other names: L. parafarraginis F0439, Lactobacillus parafarraginis F0439, Lactobacillus parafarraginis str. F0439, Lactobacillus parafarraginis strain F0439, Lactobacillus sp. oral taxon 418 str. F0439
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.